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IDProjectCategoryView StatusLast Update
0003516Slicer4Core: Diffusion and Tractography (Any modules)public2017-07-25 11:10
ReportersinkpointAssigned Toalexy 
Status assignedResolutionopen 
Product VersionSlicer 4.3.1 
Target VersionbacklogFixed in Version 
Summary0003516: Label map tractography does not produce the same result as that of Slicer3?

Hi, I'm trying to reproduce some of my result in Slicer3 scenes, and found that the LabelMapSeeding tractography module does not behave the same way in Slicer4 compare to Slicer3. Namely, Slicer4 tractography module produces results that are vast inferior to Slicer 3.6.3 given the same settings.

I uploaded screenshots, linked is the sample data.

If perform the tractography with these settings, you'll see that the resulting fornix structure is incomplete in Slicer4:

Seed label: 3

Seed spacing: 0.5
Linear Measure start threshold 0.2
Min length: 10
Max length: 800
Stopping: FA
Stopping value: 0.15
Stopping track curvature: 0.8
Integration step: 0.5

TagsNo tags attached.


2013-11-28 08:21


screenshots.tar.gz (2,799,597 bytes)

Issue History

Date Modified Username Field Change
2013-11-28 08:21 sinkpoint New Issue
2013-11-28 08:21 sinkpoint File Added: screenshots.tar.gz
2014-03-06 06:41 jcfr Status new => assigned
2014-03-06 06:41 jcfr Assigned To => alexy
2015-11-30 17:51 jcfr Category Module TractographyLabelMapSeeding => Module: Any Tractography modules
2016-02-29 14:04 jcfr Category Module Tractography (any modules) => Core: Diffusion & Tractography
2016-02-29 14:05 jcfr Category Core: Diffusion & Tractography => Core: Diffusion & Tractography (Any modules)
2016-06-20 14:14 jcfr Category Core: Diffusion & Tractography (Any modules) => Core: Diffusion and Tractography (Any modules)
2017-07-25 11:10 inorton Target Version => backlog