View Issue Details
|ID||Project||Category||View Status||Date Submitted||Last Update|
|0004203||Slicer4||Extension: (Any extensions)||public||2016-06-03 13:15||2016-06-03 15:11|
|Reporter||Sean Doyle||Assigned To||fedorov|
|Status||resolved||Resolution||no change required|
|Product Version||Slicer 4.5.0-1|
|Target Version||Fixed in Version|
|Summary||0004203: Can't export DICOM SEG object with nightly build from 2016/06/02|
Trying to follow YouTube video https://www.youtube.com/watch?v=bpTtbWgIgxQ on exporting DICOM Segmentation object. Fails to save object after error dialog is displayed.
|Steps To Reproduce|
Import DICOM series.
"Failed to create temporary directory" "/var/folders/zk/nm_5psr91yb3_yht5skh64h40000gq/T/Slicer"
Window/level found in DICOM tags (center=282.0, width=626.0) has been applied to volume 5342: T1_MPRAGE_iso_short
"Slicer has caught an internal error.
You may be able to continue from this point, but results are undefined.
Suggested action is to save your work and restart.
If you have a repeatable sequence of steps that causes this message, please report the issue following instructions available at http://slicer.org
The message detail is:
Exception thrown in event: /Users/kitware/Dashboards/Nightly/Slicer-0-build/ITKv4/Modules/IO/NRRD/src/itkNrrdImageIO.cxx:1120:
|Tags||No tags attached.|
I did reboot my machine and run disk utilities to fix permissions on the files. The error is the same.
It looks like the permissions to the temp dir is not good. Can you
and then check on the console the permissions for that directory? What are they?
Directory doesn't appear to be there:
Some of the subdirectories are also missing:
swd0-mac:var mesozoic$ ls -l /var/folders/zk/nm_5psr91yb3_yht5skh64h40000gq/T
swd0-mac:var mesozoic$ ls -l /var/folders/zk
You checked that path with the Slicer instance still running, correct? I can't explain this ...
Yes. It looks like Slicer isn't creating this directory. It is currently running. Is there an earlier build I should try or something else that could isolate the issue?
I've just talked with Steve, no idea what's going on... Do you have any interesting errors/messages in the log? (Help > Report a bug) or python console?
I have an idea: do you happen to share a home directory across multiple macs? Or maybe you brought the settings file from one machine to another?
Internally slicer keeps a persistent temp dir in the settings. If it can't find the settings it creates a new directory but if the settings exist but not the directory it might fail.
Try removing the settings file:
These are the implementation details:
Deleting the settings file worked. Thanks!
Good to know for the future, thanks
|2016-06-03 13:15||Sean Doyle||New Issue|
|2016-06-03 13:31||Sean Doyle||Note Added: 0013937|
|2016-06-03 13:49||fedorov||Assigned To||=> fedorov|
|2016-06-03 13:49||fedorov||Status||new => assigned|
|2016-06-03 13:49||fedorov||Note Added: 0013938|
|2016-06-03 13:53||Sean Doyle||Note Added: 0013939|
|2016-06-03 13:54||fedorov||Note Added: 0013940|
|2016-06-03 14:08||Sean Doyle||Note Added: 0013941|
|2016-06-03 14:43||fedorov||Note Added: 0013942|
|2016-06-03 14:43||pieper||Note Added: 0013943|
|2016-06-03 15:00||Sean Doyle||Note Added: 0013945|
|2016-06-03 15:11||fedorov||Note Added: 0013946|
|2016-06-03 15:11||fedorov||Status||assigned => resolved|
|2016-06-03 15:11||fedorov||Resolution||open => no change required|